Isidora SimovicIda HilmiRuey Terng NgKee Seang ChewShin Yee WongWay Seah LeeStephen RiordanNatalia Castaño‐Rodríguez2024-10-142024-10-142023-10-1410.1002/ueg2.12477https://dspace-cris.utar.edu.my/handle/123456789/1767<jats:title>Abstract</jats:title> <jats:sec><jats:title>Background</jats:title> <jats:p><jats:italic>ATG16L1</jats:italic> plays a fundamental role in the degradative intracellular pathway known as autophagy, being a mediator of inflammation and microbial homeostasis. The variant rs2241880 can diminish these capabilities, potentially contributing to inflammatory bowel disease (IBD) pathogenesis.</jats:p></jats:sec> <jats:sec><jats:title>Objectives</jats:title> <jats:p>To perform an updated meta‐analysis on the association between <jats:italic>ATG16L1</jats:italic> rs2241880 and IBD susceptibility by exploring the impact of age, ethnicity, and geography. Moreover, to investigate the association between rs2241880 and clinical features.</jats:p></jats:sec> <jats:sec><jats:title>Methods</jats:title> <jats:p>Literature searches up until September 2022 across 7 electronic public databases were performed for all case‐control studies on <jats:italic>ATG16L1</jats:italic> rs2241880 and IBD. Pooled odds ratios (OR<jats:sub>P</jats:sub>) and 95% CI were calculated under the random effects model.</jats:p></jats:sec> <jats:sec><jats:title>Results</jats:title> <jats:p>Our analyses included a total of 30,606 IBD patients, comprising 21,270 Crohn's disease (CD) and 9336 ulcerative colitis (UC) patients, and 33,329 controls. <jats:italic>ATG16L1</jats:italic> rs2241880 was significantly associated with CD susceptibility, where the A allele was protective (OR<jats:sub>P</jats:sub>: 0.74, 95% CI: 0.72–0.77, <jats:italic>p</jats:italic>‐value: &lt;0.001), while the G allele was a risk factor (OR<jats:sub>P</jats:sub>: 1.23, 95% CI: 1.09–1.39, <jats:italic>p</jats:italic>‐value: 0.001), depending on the minor allele frequencies observed in this multi‐ancestry study sample. rs2241880 was predominantly relevant in Caucasians from North America and Europe, and in Latin American populations. Importantly, CD patients harbouring the G allele were significantly more predisposed to perianal disease (OR<jats:sub>P</jats:sub>: 1.21, 95% CI: 1.07–1.38, <jats:italic>p</jats:italic>‐value: 0.003).</jats:p></jats:sec> <jats:sec><jats:title>Conclusions</jats:title> <jats:p><jats:italic>ATG16L1</jats:italic> rs2241880 (G allele) is a consistent risk factor for IBD in Caucasian cohorts and influences clinical outcomes. As its role in non‐Caucasian populations remains ambiguous, further studies in under‐reported populations are necessary.</jats:p></jats:sec>journal-article